GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| THCA | cis | rs6878284 | 1 | rs6596492 | chr5:101772270 | SLCO4C1 | chr5:101569694-101632253:- | 0.24 | 5.54 | 5.1E-8 | Schizophrenia |
| THCA | cis | rs6878284 | 1 | rs6596495 | chr5:101777273 | SLCO4C1 | chr5:101569694-101632253:- | 0.24 | 5.54 | 5.1E-8 | Schizophrenia |
| THCA | cis | rs6878284 | 1 | rs6596496 | chr5:101780661 | SLCO4C1 | chr5:101569694-101632253:- | 0.24 | 5.54 | 5.1E-8 | Schizophrenia |
| THCA | cis | rs6878284 | 1 | rs6596498 | chr5:101809845 | SLCO4C1 | chr5:101569694-101632253:- | 0.26 | 5.94 | 5.36E-9 | Schizophrenia |
| THCA | cis | rs2070997 | 1 | rs6597645 | chr9:133745487 | FIBCD1 | chr9:133777826-133814455:- | -0.29 | -4.86 | 1.57E-6 | Response to amphetamines |
| THCA | cis | rs10751667 | 1 | rs6597965 | chr11:964476 | TSPAN4 | chr11:842824-867116:+ | 0.15 | 3.69 | 0.000254 | Alzheimer's disease (late onset) |
| THCA | cis | rs10751667 | 1 | rs6597972 | chr11:928402 | TSPAN4 | chr11:842824-867116:+ | 0.15 | 3.67 | 0.00027 | Alzheimer's disease (late onset) |
| THCA | cis | rs7104764 | 1 | rs6598060 | chr11:243987 | PSMD13 | chr11:236808-252984:+ | -0.22 | -6.78 | 3.58E-11 | Menarche (age at onset) |
| THCA | cis | rs7104764 | 1 | rs6598060 | chr11:243987 | SIRT3 | chr11:214625-236931:- | 0.12 | 3.39 | 0.000756 | Menarche (age at onset) |
| THCA | cis | rs7104764 | 1 | rs6598061 | chr11:243853 | PSMD13 | chr11:236808-252984:+ | -0.22 | -6.73 | 4.91E-11 | Menarche (age at onset) |
| THCA | cis | rs7104764 | 1 | rs6598061 | chr11:243853 | SIRT3 | chr11:214625-236931:- | 0.12 | 3.37 | 0.000812 | Menarche (age at onset) |
| THCA | cis | rs7104764 | 1 | rs6598062 | chr11:243712 | PSMD13 | chr11:236808-252984:+ | -0.22 | -6.73 | 4.91E-11 | Menarche (age at onset) |
| THCA | cis | rs7104764 | 1 | rs6598062 | chr11:243712 | SIRT3 | chr11:214625-236931:- | 0.12 | 3.37 | 0.000812 | Menarche (age at onset) |
| THCA | cis | rs7104764 | 1 | rs6598063 | chr11:243672 | PSMD13 | chr11:236808-252984:+ | -0.22 | -6.73 | 4.91E-11 | Menarche (age at onset) |
| THCA | cis | rs7104764 | 1 | rs6598063 | chr11:243672 | SIRT3 | chr11:214625-236931:- | 0.12 | 3.37 | 0.000812 | Menarche (age at onset) |